Rendong Yang

OctopuSV and TentacleSV: a one-stop toolkit for multi-sample, cross-platform structural variant comparison and analysis featured image
Structural Variants

OctopuSV and TentacleSV: a one-stop toolkit for multi-sample, cross-platform structural variant comparison and analysis

OctopuSV standardizes ambiguous BNDs and enables advanced multi-sample SV set operations; TentacleSV provides an end-to-end automated SV analysis pipeline from raw reads to …

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Qingxiang (Allen) Guo
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A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing featured image
Nanopore

A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing

DeepChopper is a genomic language model that removes nanopore dRNA-seq chimera artifacts from base-called reads (no raw signal or alignment needed), improving transcript annotation …

yangyang-li
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ScanNeo2: a comprehensive workflow for neoantigen detection and immunogenicity prediction from diverse genomic and transcriptomic alterations featured image
Neoantigen

ScanNeo2: a comprehensive workflow for neoantigen detection and immunogenicity prediction from diverse genomic and transcriptomic alterations

ScanNeo2 is a fully automated pipeline for high-throughput neoantigen prediction from raw sequencing data, integrating diverse somatic alterations beyond SNVs/indels (e.g., …

richard-a.-schafer
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