Qingxiang (Allen) Guo

Qingxiang (Allen) Guo

Postdoctoral Scholar | Cancer Genomics & AI
Postdoctoral scholar at Northwestern University developing computational approaches for cancer genomics. My research integrates long-read sequencing, structural variant analysis, and deep learning to decode the regulatory complexity of cancer genomes.
Genomic language model mitigates chimera artifacts in nanopore direct RNA sequencing featured image

Genomic language model mitigates chimera artifacts in nanopore direct RNA sequencing

DeepChopper is a genomic language model that removes nanopore dRNA-seq chimera artifacts from base-called reads with single-base precision, enhancing transcript annotation and gene …

yangyang-li
OctopuSV and TentacleSV: a one-stop toolkit for multi-sample, cross-platform structural variant comparison and analysis featured image

OctopuSV and TentacleSV: a one-stop toolkit for multi-sample, cross-platform structural variant comparison and analysis

OctopuSV standardizes ambiguous BNDs and enables advanced multi-sample SV set operations; TentacleSV provides an end-to-end automated SV analysis pipeline from raw reads to …

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Qingxiang (Allen) Guo
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⚡️ Turn Jupyter Notebooks into Blog Posts featured image

⚡️ Turn Jupyter Notebooks into Blog Posts

Publish your data science and research directly from Jupyter Notebooks. No screenshots required.

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Qingxiang (Allen) Guo
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🎉 Easily create your own simple yet highly customizable blog featured image

🎉 Easily create your own simple yet highly customizable blog

Take full control of your personal brand and privacy by migrating away from the big tech platforms!

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Qingxiang (Allen) Guo
🧠 Sharpen your thinking with a second brain featured image

🧠 Sharpen your thinking with a second brain

Create a personal knowledge base and share your knowledge with your peers.

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Qingxiang (Allen) Guo
ScanNeo2: a comprehensive workflow for neoantigen detection and immunogenicity prediction from diverse genomic and transcriptomic alterations featured image

ScanNeo2: a comprehensive workflow for neoantigen detection and immunogenicity prediction from diverse genomic and transcriptomic alterations

ScanNeo2 is a fully automated pipeline for high-throughput neoantigen prediction from raw sequencing data, integrating diverse somatic alterations beyond SNVs/indels (e.g., …

richard-a.-schafer
📈 Communicate your results effectively with the best data visualizations featured image

📈 Communicate your results effectively with the best data visualizations

Use popular tools such as HuggingFace, Plotly, Mermaid, and data frames.

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Qingxiang (Allen) Guo
👩🏼‍🏫 Teach academic courses featured image

👩🏼‍🏫 Teach academic courses

Embed videos, podcasts, code, LaTeX math, and even test students!

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Qingxiang (Allen) Guo
✅ Manage your projects featured image

✅ Manage your projects

Easily manage your projects - create ideation mind maps, Gantt charts, todo lists, and more!

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Qingxiang (Allen) Guo